VisuaLife
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visualife.calc Package
visualife.calc.math_utils Module
visualife.core Package
visualife.core.styles Module
visualife.core.shapes Module
visualife.core.three_d Package
visualife.data Package
visualife.diagrams Package
visualife.serverside Package
visualife.utils Package
visualife.widget Package
Data formats
VisuaLife
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I
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L
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_
__call__() (visualife.widget.AjaxCommunication method)
(visualife.widget.DataStorageMap method)
(visualife.widget.ProcessData method)
A
aa_composition() (visualife.widget.MSAViewer method)
AbstractWidget (class in visualife.widget)
actions (visualife.widget.FileReaderWidget attribute)
active_selection() (visualife.widget.GLViewerWidget method)
add_action() (visualife.widget.FileReaderWidget method)
add_atom() (visualife.data.Molecule method)
(visualife.widget.GLViewerWidget method)
add_bond() (visualife.data.Molecule method)
add_cell_callback() (visualife.widget.TableWidget method)
add_column() (visualife.widget.TableWidget method)
add_data_rows() (visualife.widget.TableWidget method)
add_extra_label() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
add_filter() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
add_font() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
add_menu_option() (visualife.utils.MenuWidget method)
add_model() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
add_node() (visualife.diagrams.Diagram method)
(visualife.diagrams.InteractiveDiagram method)
add_on_clear() (visualife.widget.GLViewerWidget method)
add_page_callback() (visualife.widget.TableWidget method)
add_row() (visualife.data.ScoreFile method)
add_sequence() (visualife.widget.SequenceFeaturesBar method)
add_serie() (visualife.core.PlotLegend method)
add_sort_callback() (visualife.widget.TableWidget method)
add_sphere() (visualife.core.three_d.Svg3DPanel method)
add_start() (visualife.diagrams.InteractiveDiagram method)
add_stop() (visualife.diagrams.InteractiveDiagram method)
add_style() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
add_tics_labels() (visualife.core.Axis method)
(visualife.core.AxisX method)
(visualife.core.AxisY method)
add_to_menu() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
add_to_region() (visualife.widget.MSAViewer method)
(visualife.widget.SequenceFeaturesBar method)
(visualife.widget.SequenceViewer method)
add_vertex() (visualife.core.three_d.Svg3DPanel method)
AjaxCommunication (class in visualife.widget)
append() (visualife.diagrams.TreeNode method)
append_spheres_group() (visualife.core.three_d.Svg3DPanel method)
apply_binding() (visualife.core.HtmlViewport method)
arc (visualife.diagrams.CircularDendrogram attribute)
arc() (in module visualife.core.shapes)
are_tics_inside (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
arrow() (in module visualife.core.shapes)
as_cartoon() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
as_lines() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
as_spheres() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
as_sticks() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
async_viewer() (visualife.widget.MSAViewer method)
Atom (class in visualife.data)
atom1 (visualife.data.Bond attribute)
atom2 (visualife.data.Bond attribute)
atomcallback() (visualife.widget.GLViewerWidget method)
atoms (visualife.data.Molecule attribute)
(visualife.data.Residue attribute)
(visualife.data.Structure attribute)
average_point() (in module visualife.diagrams)
average_z() (visualife.core.three_d.Face method)
axes (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
axes_svg (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
axes_svg_x() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
axes_svg_y() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
Axis (class in visualife.core)
axis_coordinate() (visualife.core.Axis method)
(visualife.core.AxisX method)
(visualife.core.AxisY method)
axis_location (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
AxisX (class in visualife.core)
AxisY (class in visualife.core)
B
balance_binary_tree() (in module visualife.diagrams)
BarDataSet (class in visualife.core)
bars() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
big_screen_tics (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
bin_from_to() (visualife.calc.Histogram method)
binary_map() (visualife.core.CanvasViewport method)
Bond (class in visualife.data)
bonds (visualife.data.Molecule attribute)
bottom (visualife.diagrams.DiamondNode attribute)
(visualife.diagrams.DotNode attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.NodeBase attribute)
(visualife.diagrams.RectNode attribute)
boxes() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
BTreeNode (class in visualife.diagrams)
bubbles() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
BubblesDataSet (class in visualife.core)
C
CachedColorMap (class in visualife.core)
(class in visualife.core.styles)
CanvasViewport (class in visualife.core)
cartesian_position() (visualife.diagrams.CircularDendrogram method)
center() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
center_x (visualife.core.three_d.Svg3DPanel attribute)
center_y (visualife.core.three_d.Svg3DPanel attribute)
center_z (visualife.core.three_d.Svg3DPanel attribute)
Chain (class in visualife.data)
chain_id (visualife.data.Chain attribute)
chains (visualife.data.Structure attribute)
change_bars() (visualife.widget.MSAViewer method)
check_clicked_atoms() (visualife.widget.GLViewerWidget method)
children (visualife.diagrams.TreeNode attribute)
children_deepcopy (visualife.diagrams.TreeNode attribute)
circle() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
circle_segment() (in module visualife.core.shapes)
circles_group() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
CircularDendrogram (class in visualife.diagrams)
clamp() (in module visualife.core)
(in module visualife.core.styles)
clear() (visualife.calc.Histogram method)
(visualife.core.CanvasViewport method)
(visualife.core.DraggablePlot method)
(visualife.core.HtmlViewport method)
(visualife.core.Plot method)
(visualife.core.SvgViewport method)
(visualife.core.three_d.Svg3DPanel method)
(visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
clear_all() (visualife.widget.GLViewerWidget method)
clear_cell_callback() (visualife.widget.TableWidget method)
clear_data() (visualife.widget.TableWidget method)
CLICK_ON_LEGEND
CLICK_ON_LETTER
clip_path_name (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
clip_path_tics (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
clone_tree() (in module visualife.diagrams)
close() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
close_clip_path() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
close_group() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
close_marker() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
code_snippet (visualife.diagrams.InteractiveNode attribute)
collect_leaves() (visualife.diagrams.TreeNode static method)
color() (visualife.core.CachedColorMap method)
(visualife.core.styles.CachedColorMap method)
(visualife.core.styles.ColorMap method)
color_background() (visualife.widget.MSAViewer method)
(visualife.widget.SequenceViewer method)
color_name_to_hex() (in module visualife.core)
(in module visualife.core.styles)
color_sequence() (visualife.widget.SequenceViewer method)
color_sequences() (visualife.widget.MSAViewer method)
color_ss() (visualife.widget.StructureViewer method)
color_tuple() (visualife.core.CachedColorMap method)
(visualife.core.styles.CachedColorMap method)
(visualife.core.styles.ColorMap method)
ColorMap (class in visualife.core.styles)
colormap_by_name() (in module visualife.core.styles)
colors (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
colors_by_scheme() (visualife.widget.MSAViewer method)
column() (visualife.data.ScoreFile method)
column_names() (visualife.data.ScoreFile method)
combine_score_files() (in module visualife.data)
connect() (visualife.diagrams.Diagram method)
connect_xy() (visualife.diagrams.Diagram method)
connect_yx() (visualife.diagrams.Diagram method)
Connector (class in visualife.diagrams)
consecutive_find() (in module visualife.utils)
continuous_color() (visualife.core.styles.ColorMap method)
continuous_palette() (visualife.core.styles.ColorMap static method)
convert_data() (visualife.core.DataConverter method)
converter (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.DraggablePlot attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.Plot attribute)
(visualife.core.ScatterDataSet attribute)
count() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
count_faces() (visualife.core.three_d.Svg3DPanel method)
count_lines() (visualife.core.three_d.Svg3DPanel method)
count_nodes() (visualife.diagrams.TreeNode method)
count_pages() (visualife.widget.TableWidget method)
count_sequences() (visualife.widget.SequenceViewer method)
count_spheres() (visualife.core.three_d.Svg3DPanel method)
count_vertices() (visualife.core.three_d.Svg3DPanel method)
counts() (visualife.calc.Histogram method)
create_sequence() (in module visualife.data)
create_style() (in module visualife.core.styles)
create_tooltip() (in module visualife.utils)
current_page (visualife.widget.TableWidget attribute)
cx (visualife.diagrams.CircularDendrogram attribute)
cy (visualife.diagrams.CircularDendrogram attribute)
D
data (visualife.widget.TableWidget attribute)
data_ids (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
DataBins2D (class in visualife.calc)
DataConverter (class in visualife.core)
DataSet (class in visualife.core)
DataStorageMap (class in visualife.widget)
declare_variables() (visualife.diagrams.InteractiveDiagram method)
default_drawing_style (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
default_text_style (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
define_binding() (visualife.core.HtmlViewport method)
define_gradient() (visualife.core.three_d.Svg3DPanel method)
delete_option() (visualife.utils.MenuWidget method)
delete_region() (visualife.widget.SequenceFeaturesBar method)
(visualife.widget.SequenceViewer method)
delete_regions() (visualife.widget.SequenceFeaturesBar method)
(visualife.widget.SequenceViewer method)
DendrogramLayout (class in visualife.diagrams)
DendrogramNode (class in visualife.diagrams)
detect_blocks() (in module visualife.utils)
(visualife.widget.SecondaryStructureViewer method)
detect_bonds() (in module visualife.data)
detect_pdb_name_column() (visualife.data.ScoreFile method)
Diagram (class in visualife.diagrams)
DiamondNode (class in visualife.diagrams)
distance (visualife.diagrams.DendrogramNode attribute)
distance_square_to() (visualife.data.Atom method)
distance_to() (visualife.diagrams.Point method)
dot_product() (visualife.core.three_d.Svg3DPanel static method)
DotNode (class in visualife.diagrams)
dots() (in module visualife.core.shapes)
drag() (visualife.core.DraggablePlot method)
(visualife.core.three_d.Svg3DPanel method)
drag_x (visualife.core.DraggablePlot attribute)
drag_y (visualife.core.DraggablePlot attribute)
DraggablePlot (class in visualife.core)
draw() (visualife.core.AxisX method)
(visualife.core.AxisY method)
(visualife.core.BarDataSet method)
(visualife.core.BubblesDataSet method)
(visualife.core.DataSet method)
(visualife.core.DraggablePlot method)
(visualife.core.LineDataSet method)
(visualife.core.Plot method)
(visualife.core.PlotLegend method)
(visualife.core.ScatterDataSet method)
(visualife.core.three_d.Svg3DPanel method)
(visualife.diagrams.CircularDendrogram method)
(visualife.diagrams.Connector method)
(visualife.diagrams.DendrogramLayout method)
(visualife.diagrams.Diagram method)
(visualife.diagrams.DiamondNode method)
(visualife.diagrams.DotNode method)
(visualife.diagrams.InteractiveNode method)
(visualife.diagrams.NodeBase method)
(visualife.diagrams.RectNode method)
(visualife.diagrams.TreeLayout method)
(visualife.diagrams.TriangularLayout method)
(visualife.widget.SequenceFeaturesBar method)
draw_axes() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
draw_axis() (visualife.diagrams.CircularDendrogram method)
draw_grid() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
draw_legend() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
draw_plot_label() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
drawing (visualife.core.three_d.Svg3DPanel attribute)
E
element (visualife.data.Atom attribute)
element_id (visualife.widget.AbstractWidget attribute)
ellipse() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
end_drag() (visualife.core.DraggablePlot method)
(visualife.core.three_d.Svg3DPanel method)
error_msg() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
execute() (visualife.diagrams.InteractiveCondition method)
(visualife.diagrams.InteractiveNode method)
extensions (visualife.widget.FileReaderWidget attribute)
extra_labels (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
F
Face (class in visualife.core.three_d)
face_at() (visualife.core.three_d.Svg3DPanel method)
false_command (visualife.diagrams.InteractiveCondition attribute)
field_width (visualife.data.ScoreFile attribute)
FileReaderWidget (class in visualife.widget)
filter_score_file() (in module visualife.data)
finalize() (visualife.widget.GLViewerWidget method)
find_chain() (visualife.data.Structure method)
find_residues() (visualife.data.Chain method)
find_row() (visualife.data.ScoreFile method)
first_residue_id() (visualife.widget.SequenceViewer method)
fix_python_code() (in module visualife.utils)
flip_region() (visualife.widget.SequenceViewer method)
from_string() (in module visualife.utils)
G
get_bin_by_coordinates() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
get_bin_by_point() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
get_bin_coordinates() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
get_column_data() (visualife.widget.TableWidget method)
get_data_row() (visualife.widget.TableWidget method)
get_data_value() (visualife.widget.TableWidget method)
get_edge_color() (visualife.diagrams.TreeLayout method)
get_font_size() (in module visualife.core.styles)
get_height() (visualife.core.CanvasViewport method)
get_histogram() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
get_observations() (visualife.calc.DataBins2D method)
get_value() (visualife.diagrams.InteractiveDiagram method)
get_viewbox() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
get_width() (visualife.core.CanvasViewport method)
get_xyv() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
globals_copy() (visualife.diagrams.InteractiveDiagram method)
GLViewerWidget (class in visualife.widget)
grid() (in module visualife.core.shapes)
group_id (visualife.diagrams.DendrogramNode attribute)
group_id_from_leaves() (visualife.diagrams.DendrogramNode static method)
H
h (visualife.diagrams.RectNode attribute)
has_next() (visualife.diagrams.InteractiveDiagram method)
headers (visualife.data.HSSP attribute)
height (visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.NodeBase attribute)
hex_to_rgb() (in module visualife.core)
(in module visualife.core.styles)
hide() (visualife.widget.TooltipWidget method)
hide_model() (visualife.widget.StructureViewer method)
hide_region() (visualife.widget.SequenceViewer method)
hide_structure() (visualife.widget.GLViewerWidget method)
highest_bin() (visualife.calc.Histogram method)
highlight() (visualife.diagrams.Diagram method)
(visualife.diagrams.InteractiveNode method)
(visualife.diagrams.NodeBase method)
hint_message (visualife.widget.FileReaderWidget attribute)
Histogram (class in visualife.calc)
Histogram2D (class in visualife.calc)
histogram_x() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
histogram_y() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
HSSP (class in visualife.data)
hsv_to_hex() (in module visualife.core)
(in module visualife.core.styles)
hsv_to_rgb() (in module visualife.core)
(in module visualife.core.styles)
HtmlViewport (class in visualife.core)
hydrophobicity() (visualife.widget.MSAViewer method)
I
icode (visualife.data.Atom attribute)
(visualife.data.Residue attribute)
id (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
(visualife.data.Atom attribute)
(visualife.diagrams.Diagram attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.NodeBase attribute)
(visualife.diagrams.TreeLayout attribute)
(visualife.diagrams.TreeNode attribute)
identity_fraction() (visualife.widget.MSAViewer method)
ids (visualife.data.HSSP attribute)
image() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
innerHTML (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
insert_viewport() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
InteractiveCondition (class in visualife.diagrams)
InteractiveDiagram (class in visualife.diagrams)
InteractiveNode (class in visualife.diagrams)
is_dragged (visualife.core.DraggablePlot attribute)
is_hex() (in module visualife.core)
(in module visualife.core.styles)
is_inner_viewport (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
is_leaf() (visualife.diagrams.TreeNode method)
is_relevant_column() (visualife.data.ScoreFile method)
K
key_pressed() (visualife.core.three_d.Svg3DPanel method)
known_events (visualife.widget.AbstractWidget attribute)
kwargs (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
L
label (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
label_font_size (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
label_shift (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
left (visualife.diagrams.BTreeNode attribute)
(visualife.diagrams.DiamondNode attribute)
(visualife.diagrams.DotNode attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.NodeBase attribute)
(visualife.diagrams.RectNode attribute)
left_color (visualife.core.styles.ColorMap attribute)
length() (visualife.core.three_d.Svg3DPanel static method)
Line (class in visualife.core.three_d)
line() (visualife.core.CanvasViewport method)
(visualife.core.DraggablePlot method)
(visualife.core.HtmlViewport method)
(visualife.core.Plot method)
(visualife.core.SvgViewport method)
line_at() (visualife.core.three_d.Svg3DPanel method)
LineDataSet (class in visualife.core)
lines_group() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
linspace() (in module visualife.calc.math_utils)
list_variables() (visualife.diagrams.InteractiveDiagram method)
load_msa() (visualife.widget.MSAViewer method)
load_sequence() (visualife.widget.SequenceViewer method)
locals_copy() (visualife.diagrams.InteractiveDiagram method)
locator() (visualife.data.Residue method)
M
make_brighter() (in module visualife.core)
(in module visualife.core.styles)
make_darker() (in module visualife.core)
(in module visualife.core.styles)
marker_size (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
marker_style (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
max_data_value (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
max_drag_x (visualife.core.DraggablePlot attribute)
max_drag_y (visualife.core.DraggablePlot attribute)
max_screen_coordinate (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
max_value (visualife.core.styles.ColorMap attribute)
max_x (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataConverter attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
max_x() (visualife.diagrams.Diagram method)
max_y (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataConverter attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
max_y() (visualife.diagrams.Diagram method)
max_z (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
menu (visualife.widget.SequenceViewer attribute)
MenuWidget (class in visualife.utils)
merge_in() (visualife.data.ScoreFile method)
min_data_value (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
min_screen_coordinate (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
min_value (visualife.core.styles.ColorMap attribute)
min_x (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataConverter attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
min_y (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataConverter attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
min_z (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
mix_colors() (in module visualife.core)
(in module visualife.core.styles)
Molecule (class in visualife.data)
MoleculePanel (class in visualife.core.three_d)
msa_header (visualife.widget.MSAViewer attribute)
MSAViewer (class in visualife.widget)
N
n_atoms (visualife.data.Molecule attribute)
n_bins (visualife.calc.Histogram attribute)
n_bonds (visualife.data.Molecule attribute)
n_rows (visualife.data.ScoreFile attribute)
n_tics (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
name (visualife.data.Atom attribute)
next() (visualife.diagrams.InteractiveDiagram method)
next_command (visualife.diagrams.InteractiveDiagram attribute)
node (visualife.diagrams.InteractiveNode attribute)
node_style (visualife.diagrams.Diagram attribute)
NodeBase (class in visualife.diagrams)
nodes() (visualife.diagrams.TreeNode method)
normalize() (visualife.core.three_d.Svg3DPanel static method)
O
observe() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram method)
(visualife.calc.Histogram2D method)
observe_x_y() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
offset_x (visualife.core.three_d.Svg3DPanel attribute)
offset_y (visualife.core.three_d.Svg3DPanel attribute)
on_complete() (visualife.widget.AjaxCommunication method)
outliers (visualife.calc.Histogram attribute)
outliers() (visualife.calc.DataBins2D method)
(visualife.calc.Histogram2D method)
owner (visualife.data.Atom attribute)
(visualife.data.Chain attribute)
(visualife.data.Residue attribute)
P
parent (visualife.diagrams.TreeNode attribute)
parent_viewport (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
parse_mol_data() (in module visualife.data)
parse_pdb_atom() (in module visualife.data)
parse_pdb_data() (in module visualife.data)
path() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
plane_normal() (visualife.core.three_d.Svg3DPanel static method)
Plot (class in visualife.core)
plot (visualife.core.DataConverter attribute)
plot_label (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
plot_label_font_size (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
PlotLegend (class in visualife.core)
Point (class in visualife.diagrams)
polar_position() (visualife.diagrams.CircularDendrogram method)
polar_to_cartesian() (in module visualife.calc.math_utils)
polygon() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
polyline() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
prepare_data_colors() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
print_menu() (visualife.utils.MenuWidget method)
ProcessData (class in visualife.widget)
R
r (visualife.diagrams.DotNode attribute)
r_max (visualife.diagrams.CircularDendrogram attribute)
radial_gradient() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
read_clustal() (in module visualife.data)
read_clustering_tree() (in module visualife.data)
read_fasc_file() (visualife.data.ScoreFile method)
read_fasta() (in module visualife.data)
read_msf() (in module visualife.data)
read_newick_dictionary() (in module visualife.data)
read_score_file() (visualife.data.ScoreFile method)
rect() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
RectNode (class in visualife.diagrams)
region_cmap (visualife.widget.SequenceViewer attribute)
region_for_name() (visualife.widget.SequenceViewer method)
region_for_position() (visualife.widget.SequenceViewer method)
region_legend_id() (visualife.widget.SequenceViewer method)
region_tooltip() (visualife.widget.MSAViewer method)
(visualife.widget.SequenceViewer method)
regions_palette (visualife.widget.SequenceViewer attribute)
regular_polygon() (in module visualife.calc.math_utils)
remove_model() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
remove_style() (visualife.widget.StructureViewer method)
repack_node_style_args() (in module visualife.diagrams)
replace_bfactors() (visualife.widget.StructureViewer method)
replace_data() (visualife.widget.TableWidget method)
replace_value() (visualife.data.ScoreFile method)
res_id (visualife.data.Residue attribute)
res_name (visualife.data.Residue attribute)
Residue (class in visualife.data)
residues (visualife.data.Chain attribute)
(visualife.data.Structure attribute)
rgb_norm_to_hex() (in module visualife.core)
(in module visualife.core.styles)
rgb_to_hex() (in module visualife.core)
(in module visualife.core.styles)
rhomb() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
rhomb_group() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
right (visualife.diagrams.BTreeNode attribute)
(visualife.diagrams.DiamondNode attribute)
(visualife.diagrams.DotNode attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.NodeBase attribute)
(visualife.diagrams.RectNode attribute)
right_color (visualife.core.styles.ColorMap attribute)
rotate_vertices() (visualife.core.three_d.Svg3DPanel method)
row() (visualife.data.ScoreFile method)
rows_per_page (visualife.widget.TableWidget attribute)
run_async_func() (in module visualife.utils)
S
save_as_png() (visualife.widget.GLViewerWidget method)
scale (visualife.core.three_d.Svg3DPanel attribute)
scale() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
scale_x() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
scale_y() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
scatter() (visualife.core.DraggablePlot method)
(visualife.core.Plot method)
ScatterDataSet (class in visualife.core)
ScoreFile (class in visualife.data)
scorefile_to_json_dictionary() (in module visualife.serverside)
screen_coordinate() (visualife.core.Axis method)
(visualife.core.AxisX method)
(visualife.core.AxisY method)
screen_x (visualife.core.AxisY attribute)
screen_y (visualife.core.AxisX attribute)
secondary_structure (visualife.widget.MSAViewer attribute)
(visualife.widget.SequenceViewer attribute)
secondary_structure_colors() (visualife.widget.SequenceViewer static method)
secondary_structure_residues() (in module visualife.data)
secondary_structure_string() (in module visualife.data)
SecondaryStructureViewer (class in visualife.widget)
select_row() (visualife.widget.TableWidget method)
selected_rows (visualife.widget.TableWidget attribute)
seq_aligned (visualife.data.HSSP attribute)
seq_length (visualife.data.HSSP attribute)
sequence() (visualife.widget.SequenceViewer method)
sequence_blocks_in_line (visualife.widget.SequenceViewer attribute)
sequence_name (visualife.widget.SequenceViewer attribute)
SequenceFeaturesBar (class in visualife.widget)
sequences (visualife.data.HSSP attribute)
SequenceViewer (class in visualife.widget)
series (visualife.core.PlotLegend attribute)
set_axes() (visualife.core.DraggablePlot method)
set_background() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
set_event_callback() (visualife.widget.AbstractWidget method)
set_min_and_max_data() (visualife.core.DataConverter method)
set_molecule() (visualife.core.three_d.MoleculePanel method)
set_nice_range() (visualife.core.DataConverter method)
set_plot_at_xy() (visualife.core.DraggablePlot method)
set_range() (visualife.core.Axis method)
(visualife.core.AxisX method)
(visualife.core.AxisY method)
set_style() (visualife.diagrams.TreeLayout method)
set_value() (visualife.diagrams.InteractiveDiagram method)
set_viewbox() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
shade() (in module visualife.core)
(in module visualife.core.styles)
shannon_entropy() (visualife.widget.MSAViewer method)
shape_id (visualife.diagrams.NodeBase attribute)
shift_x (visualife.core.DraggablePlot attribute)
shift_y (visualife.core.DraggablePlot attribute)
show() (visualife.widget.TooltipWidget method)
show_distance() (visualife.widget.StructureViewer method)
show_header (visualife.widget.SequenceViewer attribute)
show_ligand_contacts() (visualife.widget.GLViewerWidget method)
show_model() (visualife.widget.StructureViewer method)
show_region() (visualife.widget.SequenceViewer method)
show_structure() (visualife.widget.GLViewerWidget method)
show_table() (visualife.widget.TableWidget method)
show_tics (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
show_tics_labels (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
show_tooltip() (visualife.widget.SequenceFeaturesBar method)
small_screen_tics (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
Sphere (class in visualife.core.three_d)
sphere_at() (visualife.core.three_d.Svg3DPanel method)
SpheresGroup (class in visualife.core.three_d)
square() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
squares_grid() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
squares_group() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
start() (visualife.diagrams.InteractiveDiagram method)
start_clip_path() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
start_drag() (visualife.core.DraggablePlot method)
(visualife.core.three_d.Svg3DPanel method)
start_group() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
start_marker() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
Structure (class in visualife.data)
StructureViewer (class in visualife.widget)
style (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
substitute_template() (in module visualife.utils)
subtract_vectors() (visualife.core.three_d.Svg3DPanel static method)
subtree_size() (in module visualife.diagrams)
svg (visualife.core.HtmlViewport attribute)
Svg3DPanel (class in visualife.core.three_d)
svg_height (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
svg_width (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
SvgViewport (class in visualife.core)
T
TableWidget (class in visualife.widget)
text() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
text_id (visualife.diagrams.NodeBase attribute)
text_length() (visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
text_style (visualife.core.HtmlViewport attribute)
(visualife.core.SvgViewport attribute)
(visualife.diagrams.Diagram attribute)
tics() (visualife.core.Axis method)
(visualife.core.AxisX method)
(visualife.core.AxisY method)
tics_at_fraction() (visualife.core.Axis method)
(visualife.core.AxisX method)
(visualife.core.AxisY method)
tics_at_values() (visualife.core.Axis method)
(visualife.core.AxisX method)
(visualife.core.AxisY method)
tics_factor (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
tics_label_font_size (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
tics_labels (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
tics_vertical (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
tics_width (visualife.core.Axis attribute)
(visualife.core.AxisX attribute)
(visualife.core.AxisY attribute)
title (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
tooltip_text (visualife.widget.TooltipWidget attribute)
TooltipWidget (class in visualife.widget)
top (visualife.diagrams.DiamondNode attribute)
(visualife.diagrams.DotNode attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.NodeBase attribute)
(visualife.diagrams.RectNode attribute)
translate() (visualife.core.CanvasViewport method)
tree_from_dictionary() (in module visualife.data)
TreeLayout (class in visualife.diagrams)
TreeNode (class in visualife.diagrams)
triangle() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
triangle_group() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
TriangularLayout (class in visualife.diagrams)
true_command (visualife.diagrams.InteractiveCondition attribute)
type (visualife.data.Bond attribute)
U
unselect_all_rows() (visualife.widget.TableWidget method)
update_menu() (visualife.utils.MenuWidget method)
update_viewer() (visualife.widget.GLViewerWidget method)
V
values() (visualife.diagrams.TreeNode method)
vertices (visualife.core.three_d.SpheresGroup attribute)
viewport (visualife.core.DraggablePlot attribute)
(visualife.core.Plot attribute)
viewport_name() (visualife.core.CanvasViewport method)
(visualife.core.HtmlViewport method)
(visualife.core.SvgViewport method)
visualife.calc (module)
visualife.calc.math_utils (module)
visualife.core (module)
visualife.core.shapes (module)
visualife.core.styles (module)
visualife.core.three_d (module)
visualife.data (module)
visualife.diagrams (module)
visualife.serverside (module)
visualife.utils (module)
visualife.widget (module)
W
w (visualife.diagrams.RectNode attribute)
which_region_in_legend() (visualife.widget.SequenceViewer method)
width (visualife.calc.Histogram attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.NodeBase attribute)
write() (visualife.data.ScoreFile method)
write_pdb_atom() (in module visualife.data)
X
x (visualife.data.Atom attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.Point attribute)
(visualife.widget.TooltipWidget attribute)
x_data (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
Y
y (visualife.core.three_d.SpheresGroup attribute)
(visualife.data.Atom attribute)
(visualife.diagrams.InteractiveNode attribute)
(visualife.diagrams.Point attribute)
(visualife.widget.TooltipWidget attribute)
y_data (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
Z
z (visualife.data.Atom attribute)
z_data (visualife.core.BarDataSet attribute)
(visualife.core.BubblesDataSet attribute)
(visualife.core.DataSet attribute)
(visualife.core.LineDataSet attribute)
(visualife.core.ScatterDataSet attribute)
z_order (visualife.core.three_d.Svg3DPanel attribute)
zoom_heteroatom() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
zoom_to() (visualife.widget.GLViewerWidget method)
(visualife.widget.StructureViewer method)
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